@bdrifter: right now the order of the files loaded/processed is the order they are provided by your OS/filesystem. but more important please know that JDownloader does not guarantee any adding/crawling/processing order of links that you add. Link A B C can result in processing of B C A and order in lost as C A B.
any specific reason why the order is important? and what order is important? crawling? adding? downloading? and why? maybe you can explain your use case and we can find a solution to your problem then
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JD-Dev & Server-Admin
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